De Novo NGS Data Compression

DOI10.1007/978-3-319-59826-0_4zbMath1457.68086MaRDI QIDQ3305522

Claire Lemaitre, Dominique Lavenier, Gaetan Benoit, Guillaume Rizk, Erwan Drezen

Publication date: 7 August 2020

Published in: Algorithms for Next-Generation Sequencing Data (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/978-3-319-59826-0_4

Mathematics Subject Classification ID

68P30: Coding and information theory (compaction, compression, models of communication, encoding schemes, etc.) (aspects in computer science)

92D10: Genetics and epigenetics

Uses Software

• Samtools
• SCALCE
• BWA