Phase transition in the genome evolution favors nonrandom distribution of genes on chromosomes

DOI10.1142/S0129183109014370MaRDI QIDQ3401871zbMATH OpenOpenAlexFDO

Authors Jakub Kowalski, Wojciech Waga, Marta Zawierta, Stanisław Cebrat

Publication date 1 February 2010

Published in International Journal of Modern Physics C (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0901.0990

zbMATH Keywords

Monte Carlo simulationcompetitionevolutionrecombinationcomplementationchromosome structure

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Phase transitions (general) in equilibrium statistical mechanics (82B26) Critical phenomena in equilibrium statistical mechanics (82B27)

Abstract: We have used the Monte Carlo based computer models to show that selection pressure could affect the distribution of recombination hotspots along the chromosome. Close to critical crossover rate, where genomes may switch between the Darwinian purifying selection or complementation of haplotypes, the distribution of recombination events and the force of selection exerted on genes affect the structure of chromosomes. The order of expression of gene s and their location on chromosome may decide about the extinction or survival of competing populations.

Recommendations

• Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length
• PHASE TRANSITION IN SEXUAL REPRODUCTION AND BIOLOGICAL EVOLUTION
• The equilibrium distribution for a generalized Sankoff-Ferretti model accurately predicts chromosome size distributions in a wide variety of species
• Scale invariant correlations between genes and SNPs on human chromosome 1 reveal potential evolutionary mechanisms
• EXTINCTION IN GENETIC BIT-STRING MODEL WITH SEXUAL RECOMBINATION

Cites work

• A bit-string model for biological aging
• GAMETE RECOGNITION AND COMPLEMENTARY HAPLOTYPES IN SEXUAL PENNA AGEING MODEL
• PHASE TRANSITION IN SEXUAL REPRODUCTION AND BIOLOGICAL EVOLUTION
• SCALING EFFECTS IN THE PENNA AGEING MODEL
• Statistical genetics and evolution

Cited in

(6)

• COMPLEX BIOLOGICAL IMMUNE SYSTEM THROUGH THE EYES OF DUAL-PHASE EVOLUTION
• PRDM9 and the evolution of recombination hotspots
• PHASE TRANSITION IN SEXUAL REPRODUCTION AND BIOLOGICAL EVOLUTION
• Genome analyses and modelling the relationships between coding density, recombination rate and chromosome length
• Coding sequence density estimation via topological pressure
• The recombination hotspot paradox: co-evolution between PRDM9 and its target sites

This page was built for publication: Phase transition in the genome evolution favors nonrandom distribution of genes on chromosomes

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3401871)