On detailed balance and reversibility of semi-Markov processes and single-molecule enzyme kinetics

DOI10.1063/1.2432065zbMATH Open1121.60090OpenAlexW2049761345MaRDI QIDQ3442175FDOQ3442175

Authors: Hongyun Wang, Hong Qian 

Publication date: 16 May 2007

Published in: Journal of Mathematical Physics (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/59049f06bfa86451b511dfc832e8159af6f007ec

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Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Markov renewal processes, semi-Markov processes (60K15) Applications of Markov renewal processes (reliability, queueing networks, etc.) (60K20) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cites Work

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• Brownian motion in a field of force and the diffusion model of chemical reactions
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• Irreversibility and Generalized Noise
• On aggregated Markov processes
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• Stochastic approach to chemical kinetics
• Mathematical theory of nonequilibrium steady states. On the frontier of probability and dynamical systems.
• Mathematical formalism for isothermal linear irreversibility
• On reversible semi-Markov processes
• New Approach to Nonequilibrium Processes
• A note on the age of the absorbing semi-Markov process

Cited In (11)

• Renewal-reward process formulation of motor protein dynamics
• On balance relations for irreversible chemical reaction networks
• The explicit form of the rate function for semi-Markov processes and its contractions
• A hierarchical kinetic theory of birth, death and fission in age-structured interacting populations
• Fixation times in differentiation and evolution in the presence of bottlenecks, deserts, and oases
• Fluctuation relation in continuous-time random walks driven by an external field
• Deriving a kinetic uncertainty relation for piecewise deterministic processes: from classical to quantum
• Fluctuation theorems for discrete kinetic models of molecular motors
• A matrix computational approach to kinesin neck linker extension
• The fluctuation theorem for currents in semi-Markov processes
• Large deviations for the empirical measure and empirical flow of Markov renewal processes with a countable state space

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