Detection of Hopf bifurcations in chemical reaction networks using convex coordinates
DOI10.1016/J.JCP.2015.02.050zbMATH Open1349.92168DBLPjournals/jcphy/ErramiEGSS015OpenAlexW2106974669WikidataQ62015413 ScholiaQ62015413MaRDI QIDQ349840FDOQ349840
Authors: Hassan Errami, Markus Eiswirth, Werner M. Seiler, Thomas Sturm, Andreas Weber, Dima Grigoriev
Publication date: 5 December 2016
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jcp.2015.02.050
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Cites Work
- PoCaB: A Software Infrastructure to Explore Algebraic Methods for Bio-chemical Reaction Networks
- polymake: a framework for analyzing convex polytopes
- Title not available (Why is that?)
- Deterministic Nonperiodic Flow
- Title not available (Why is that?)
- Criterion of Hopf bifurcations without using eigenvalues
- Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems
- Title not available (Why is that?)
- Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models
- Involution. The formal theory of differential equations and its applications in computer algebra
- Oscillations in non-mass action kinetics models of biochemical reaction networks arising from pairs of subnetworks
- Toric dynamical systems
- Perturbation methods, bifurcation theory and computer algebra
- CLOSED-FORM CONDITIONS OF BIFURCATION POINTS FOR GENERAL DIFFERENTIAL EQUATIONS
- A family of sparse polynomial systems arising in chemical reaction systems
- Generalized mass action systems: complex balancing equilibria and sign vectors of the stoichiometric and kinetic-order subspaces
- The complexity of linear problems in fields
- Real quantifier elimination is doubly exponential
- Simplification of quantifier-free formulae over ordered fields
- Deciding Hopf bifurcations by quantifier elimination in a software-component architecture
- Multistationarity in the activation of a MAPK: parametrizing the relevant region in parameter space
- Weak Integer Quantifier Elimination Beyond the Linear Case
- Investigating Generic Methods to Solve Hopf Bifurcation Problems in Algebraic Biology
- Title not available (Why is that?)
- On Proving the Absence of Oscillations in Models of Genetic Circuits
- Artificial Intelligence and Symbolic Computation
- Investigating algebraic and logical algorithms to solve Hopf bifurcation problems in algebraic biology
- Quantifier elimination for real algebra -- the quadratic case and beyond
- Bistability and oscillations in chemical reaction networks
- Weak quantifier elimination for the full linear theory of the integers
Cited In (27)
- Better answers to real questions
- Combinatorial approaches to Hopf bifurcations in systems of interacting elements
- Hopf bifurcations in a predator-prey model with an omnivore
- Using machine learning to improve cylindrical algebraic decomposition
- Efficient methods to compute Hopf bifurcations in chemical reaction networks using reaction coordinates
- The smallest bimolecular mass action reaction networks admitting Andronov–Hopf bifurcation
- Qualitative studies of some biochemical models
- A survey of some methods for real quantifier elimination, decision, and satisfiability and their applications
- Splitting Reactions Preserves Nondegenerate Behaviors in Chemical Reaction Networks
- Coordinate-independent criteria for Hopf bifurcations
- Algorithmic reduction of biological networks with multiple time scales
- Novel method to detect Hopf bifurcation in a delayed fractional-order network model with bidirectional ring structure
- On the existence of Hopf bifurcations in the sequential and distributive double phosphorylation cycle
- Toric ideals and graph theory to analyze Hopf bifurcations in mass action systems
- Inheritance of oscillation in chemical reaction networks
- Computing Hopf bifurcations in chemical reaction networks using reaction coordinates
- Limit cycles in a model of olfactory sensory neurons
- Emergence of oscillations in a mixed-mechanism phosphorylation system
- Bistability and oscillations in chemical reaction networks
- Symbolic Proof of Bistability in Reaction Networks
- Hopf Bifurcations of Reaction Networks with Zero-One Stoichiometric Coefficients
- Stability, Discretization, and Bifurcation Analysis for a Chemical Reaction System
- Building oscillatory chemical reaction networks by adding reversible reactions
- The use of reaction network theory for finding network motifs in oscillatory mechanisms and kinetic parameter estimation
- Response to stress via underlying deep gene regulation networks
- Global Hopf bifurcation in networks with fast feedback cycles
- Algebra, geometry and topology of ERK kinetics
Uses Software
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