EFFECTS OF LANGMUIR KINETICS ON TWO-LANE TOTALLY ASYMMETRIC EXCLUSION PROCESSES OF MOLECULAR MOTOR TRAFFIC

DOI10.1142/S0129183107011479MaRDI QIDQ3500207zbMATH OpenOpenAlexFDO

Authors Ruili Wang, Rui Jiang, Jiming Liu, Qing-Song Wu, Mingzhe Liu

Publication date 3 June 2008

Published in International Journal of Modern Physics C (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/q-bio/0703043

zbMATH Keywords

density profilesjumping effectsLangmuir kineticstwo-lane TASEPs

Mathematics Subject Classification ID

Dynamic continuum models (systems of particles, etc.) in time-dependent statistical mechanics (82C21)

Abstract: In this paper, we study a two-lane totally asymmetric simple exclusion process (TASEP) coupled with random attachment and detachment of particles (Langmuir kinetics) in both lanes under open boundary conditions. Our model can describe the directed motion of molecular motors, attachment and detachment of motors, and free inter-lane transition of motors between filaments. In this paper, we focus on some finite-size effects of the system because normally the sizes of most real systems are finite and small (e.g., size $leq10,000$). A special finite-size effect of the two-lane system has been observed, which is that the density wall moves left first and then move towards the right with the increase of the lane-changing rate. We called it the jumping effect. We find that increasing attachment and detachment rates will weaken the jumping effect. We also confirmed that when the size of the two-lane system is large enough, the jumping effect disappears, and the two-lane system has a similar density profile to a single-lane TASEP coupled with Langmuir kinetics. Increasing lane-changing rates has little effect on density and current after the density reaches maximum. Also, lane-changing rate has no effect on density profiles of a two-lane TASEP coupled with Langmuir kinetics at a large attachment/detachment rate and/or a large system size. Mean-field approximation is presented and it agrees with our Monte Carlo simulations.

Recommendations

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Cites work

• EFFECTS OF RAMPS IN THE NAGEL–SCHRECKENBERG TRAFFIC MODEL
• Exclusion processes with internal states
• MULTISPIN CODING TECHNIQUE FOR NONEQUILIBRIUM REWEIGHTING
• On kinematic waves I. Flood movement in long rivers
• Synchronization of kinks in the two-lane totally asymmetric simple exclusion process with open boundary conditions
• The Heisenberg chain as a dynamical model for protein synthesis - some theoretical and experimental results
• Traffic of molecular motors through tube-like compartments
• Two-channel totally asymmetric simple exclusion processes

Cited in

(6)

• Dynamics in multi-Lane TASEPs coupled with asymmetric lane-changing rates
• Analytical investigation on totally asymmetric simple exclusion process with Langmuir kinetics and a parallel update with two sub-steps
• Collective dynamics on a two-Lane asymmetrically coupled TASEP with mutually interactive Langmuir kinetics
• Multilane driven diffusive systems
• Biased dynamics of Langmuir kinetics and coupling on exclusion process
• Collective dynamics of an inhomogeneous two-channel exclusion process: theory and Monte Carlo simulations

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