Molecular embedding via a second order dissimilarity parameterized approach

DOI10.1137/070688547MaRDI QIDQ3581065zbMATH OpenOpenAlexWikidataFDO

Authors Ian Grooms, Robert Michael Lewis, Michael W. Trosset

Publication date 16 August 2010

Published in SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL https://semanticscholar.org/paper/59bf2107252edfdac05105adf5129ea77e1037eb

zbMATH Keywords

graph embeddingEuclidean distance matricesspectral functionsdistance geometryprotein foldingrank constraintsmolecular conformationmolecular embedding

Mathematics Subject Classification ID

Numerical mathematical programming methods (65K05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

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Cited in

(4)

• Euclidean distance matrices and applications
• Conditional quadratic semidefinite programming: examples and methods
• Euclidean Distance Matrix Completion and Point Configurations from the Minimal Spanning Tree
• Euclidean distance matrix completion problems

Describes a project that uses

Uses Software

• ARPACK

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