Molecular embedding via a second order dissimilarity parameterized approach

DOI10.1137/070688547zbMATH Open1193.92039OpenAlexW2079628411WikidataQ61785922 ScholiaQ61785922MaRDI QIDQ3581065FDOQ3581065

Authors: Ian Grooms, Robert Michael Lewis, Michael W. Trosset 

Publication date: 16 August 2010

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/59bf2107252edfdac05105adf5129ea77e1037eb

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zbMATH Keywords

graph embeddingEuclidean distance matricesspectral functionsdistance geometryprotein foldingrank constraintsmolecular conformationmolecular embedding

Mathematics Subject Classification ID

Numerical mathematical programming methods (65K05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)

Cited In (4)

• Euclidean Distance Matrix Completion and Point Configurations from the Minimal Spanning Tree
• Conditional quadratic semidefinite programming: examples and methods
• Euclidean distance matrices and applications
• Euclidean distance matrix completion problems

Uses Software

• ARPACK

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