A new method for prediction of RNA secondary structure with pseudoknots, based on helix removal and refinement

DOI10.1080/02331930902944986zbMath1175.92011OpenAlexW2062772609MaRDI QIDQ3646093

Julian Lee, Bayarbaatar Amgalan

Publication date: 19 November 2009

Published in: Optimization (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1080/02331930902944986

zbMATH Keywords

RNAsecondary structurepseudoknot

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Integer programming (90C10) Dynamic programming (90C39) Biochemistry, molecular biology (92C40)

Cites Work

• Dynamic programming algorithms for RNA secondary structure prediction with pseudoknots
• Global minimization algorithms for concave quadratic programming problems
• Algorithms for Loop Matchings

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