Protein structure optimization by side-chain positioning via beta-complex
DOI10.1007/S10898-012-9886-3zbMATH Open1277.90166OpenAlexW2003237067MaRDI QIDQ367168FDOQ367168
Authors: Joonghyun Ryu, D.-S. Kim 
Publication date: 26 September 2013
Published in: Journal of Global Optimization (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s10898-012-9886-3
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optimalheuristicinteger linear programmingVoronoi diagrambeta-complexBetaSCPprotein designprotein structure optimizationquasi-triangulationRASProtamerSCWRL
Approximation methods and heuristics in mathematical programming (90C59) Applications of mathematical programming (90C90) Integer programming (90C10)
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- Side Chain-Positioning as an Integer Programming Problem
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Cited In (9)
- \(\alpha\)-concave hull, a generalization of convex hull
- Recent advances on the interval distance geometry problem
- An exact algorithm for side-chain placement in protein design
- Efficient use of semidefinite programming for selection of rotamers in protein conformations
- A semidefinite programming approach to side chain positioning with new rounding strategies
- Side Chain-Positioning as an Integer Programming Problem
- Fast and accurate algorithms for protein side-chain packing
- Research in Computational Molecular Biology
- BetaSCP2: a program for the optimal prediction of side-chains in proteins
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