Hyperbolic smoothing and penalty techniques applied to molecular structure determination
DOI10.1016/J.ORL.2011.07.007zbMATH Open1235.90121OpenAlexW1999003990WikidataQ62562176 ScholiaQ62562176MaRDI QIDQ408445FDOQ408445
Adilson Elias Xavier, Michael Souza, Nelson Maculan, Carlile Lavor
Publication date: 5 April 2012
Published in: Operations Research Letters (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.orl.2011.07.007
Recommendations
- scientific article; zbMATH DE number 1552035
- Smoothing techniques for exact penalty methods
- Solving large scale molecular distance geometry problems by a smoothing technique via the Gaussian transform and D.C. programming
- scientific article; zbMATH DE number 1953154
- scientific article; zbMATH DE number 1101495
- Global optimization for molecular clusters using a new smoothing approach
- scientific article; zbMATH DE number 841192
- Accelerating smooth molecular surface calculation
- Double variable neighbourhood search with smoothing for the molecular distance geometry problem
global optimizationprotein structuremolecular distance geometry problemNMR experimentssmoothing techniques
Cites Work
- An updated geometric build-up algorithm for solving the molecular distance geometry problems with sparse distance data
- An Alternating Projection Algorithm for Computing the Nearest Euclidean Distance Matrix
- Title not available (Why is that?)
- The Molecule Problem: Exploiting Structure in Global Optimization
- Title not available (Why is that?)
- A linear-time algorithm for solving the molecular distance geometry problem with exact inter-atomic distances
- Rigid versus unique determination of protein structures with geometric buildup
- Large-Scale Molecular Optimization from Distance Matrices by a D.C. Optimization Approach
- Optimal covering of plane domains by circles via hyperbolic smoothing
- Global Continuation for Distance Geometry Problems
- Molecular modeling and simulation. An interdisciplinary guide
- Modern homotopy methods in optimization
- Double variable neighbourhood search with smoothing for the molecular distance geometry problem
- Analysis and solution of the ill-posed inverse heat conduction problem
- The Solution of the Metric STRESS and SSTRESS Problems in Multidimensional Scaling Using Newtons Method
- A stochastic/perturbation global optimization algorithm for distance geometry problems
- Distance geometry optimization for protein structures
- A smooth hyperbolic approximation to the Mohr-Coulomb yield criterion
- Hyperbolic Penalty: A New Method for Nonlinear Programming with Inequalities
- Hyperbolic approximations for a Cauchy problem for the heat equation
- A Branch‐and‐Prune algorithm for the Molecular Distance Geometry Problem
- A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
- A Nonlinear Approximation Method for Solving a Generalized Rectangular Distance Weber Problem
- Extending the geometric build-up algorithm for the molecular distance geometry problem
Cited In (7)
- Title not available (Why is that?)
- On the polynomiality of finding \(^K\text{DMDGP}\) re-orders
- Minimal NMR distance information for rigidity of protein graphs
- A quantum approach to the discretizable molecular distance geometry problem
- Generalization of hyperbolic smoothing approach for non-smooth and non-Lipschitz functions
- Discretization orders for protein side chains
- Clifford algebra and the discretizable molecular distance geometry problem
Uses Software
This page was built for publication: Hyperbolic smoothing and penalty techniques applied to molecular structure determination
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q408445)