Clustering gene expression time course data using mixtures of multivariate t-distributions

DOI10.1016/J.JSPI.2011.11.026zbMATH Open1236.62068OpenAlexW1988261662MaRDI QIDQ413359FDOQ413359

Authors: Sanjeena Subedi, Paul D. McNicholas 

Publication date: 4 May 2012

Published in: Journal of Statistical Planning and Inference (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jspi.2011.11.026

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zbMATH Keywords

model-based clusteringCholesky decomposition

Mathematics Subject Classification ID

Multivariate distribution of statistics (62H10) Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Estimation in multivariate analysis (62H12) Biochemistry, molecular biology (92C40)

Cites Work

• Estimating the dimension of a model
• Statistical analysis of finite mixture distributions
• Title not available (Why is that?)
• Model-Based Clustering, Discriminant Analysis, and Density Estimation
• Consistent estimation of the order of mixture models.
• Model-based clustering of longitudinal data
• Variational approximations in Bayesian model selection for finite mixture distributions
• High-dimensional data clustering
• Modelling high-dimensional data by mixtures of factor analyzers
• Bayesian computation and stochastic systems. With comments and reply.
• Title not available (Why is that?)
• Multivariate T-Distributions and Their Applications
• Discriminant Analysis with Singular Covariance Matrices: Methods and Applications to Spectroscopic Data
• Model-based classification using latent Gaussian mixture models
• Consistent estimation of a mixing distribution
• Model-based classification via mixtures of multivariate \(t\)-distributions
• Extending mixtures of multivariate \(t\)-factor analyzers
• Mixtures of modified \(t\)-factor analyzers for model-based clustering, classification, and discriminant analysis
• Joint mean-covariance models with applications to longitudinal data: unconstrained parameterisation

Cited In (35)

• Model-based clustering using a new multivariate skew distribution
• Model-based clustering of longitudinal data
• Mixtures of multivariate contaminated normal regression models
• Joint clustering multiple longitudinal features: a comparison of methods and software packages with practical guidance
• Cluster analysis using multivariate normal mixture models to detect differential gene expression with microarray data
• Flexible mixture modelling with the polynomial Gaussian cluster-weighted model
• Mixtures of skew-\(t\) factor analyzers
• Parsimonious skew mixture models for model-based clustering and classification
• Model-based clustering
• Title not available (Why is that?)
• Clustering and classification via cluster-weighted factor analyzers
• Clustering via mixture regression models with random effects
• Variational Bayes approximations for clustering via mixtures of normal inverse Gaussian distributions
• Robust clustering using exponential power mixtures
• Clustering longitudinal profiles using P-splines and mixed effects models applied to time-course gene expression data
• Model-based clustering of longitudinal data: application to modeling disease course and gene expression trajectories
• Title not available (Why is that?)
• Capturing patterns via parsimonious \(t\) mixture models
• Growth mixture modeling with measurement selection
• A new information criterion based on Langevin mixture distribution for clustering circular data with application to time course genomic data
• Model-based clustering via linear cluster-weighted models
• Clustering time-course microarray data using functional Bayesian infinite mixture model
• On the characterization of flowering curves using Gaussian mixture models
• clusterMLD: An Efficient Hierarchical Clustering Method for Multivariate Longitudinal Data
• Title not available (Why is that?)
• Analyzing gene expression time-courses based on multi-resolution shape mixture model
• Cluster-based network model for time-course gene expression data
• A novel HMM-based clustering algorithm for the analysis of gene expression time-course data
• Discussion of `Model-based clustering and classification with non-normal mixture distributions' by Lee and McLachlan
• Dimension reduction for model-based clustering via mixtures of multivariate \(t\)-distributions
• Model-based clustering, classification, and discriminant analysis via mixtures of multivariate \(t\)-distributions
• The determination of uncertainty levels in robust clustering of subjects with longitudinal observations using the Dirichlet process mixture
• longclust
• A mixture of common skew-\(t\) factor analysers
• Clustering time series gene expression data based on sum-of-exponentials fitting

Uses Software

• PGMM

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