Solving a generalized distance geometry problem for protein structure determination

DOI10.1007/S11538-011-9644-6zbMATH Open1402.92333OpenAlexW2070787877WikidataQ30400999 ScholiaQ30400999MaRDI QIDQ417280FDOQ417280

Zhijun Wu, Atilla Sit

Publication date: 14 May 2012

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-011-9644-6

zbMATH Keywords

biomolecular modelingconstrained and unconstrained optimizationlinear and nonlinear systems of equationsmolecular distance geometryprotein structure determination

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) General theory of distance geometry (51K05)

Cites Work

• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• Numerical Optimization
• An updated geometric build-up algorithm for solving the molecular distance geometry problems with sparse distance data
• An Alternating Projection Algorithm for Computing the Nearest Euclidean Distance Matrix
• A linear-time algorithm for solving the molecular distance geometry problem with exact inter-atomic distances
• Rigid versus unique determination of protein structures with geometric buildup
• Molecular modeling and simulation. An interdisciplinary guide.
• A geometric buildup algorithm for the solution of the distance geometry problem using least-squares approximation
• A geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data

Cited In (7)

• Recent advances on the interval distance geometry problem
• Title not available (Why is that?)
• A constrained interval approach to the generalized distance geometry problem
• Optimal partial discretization orders for discretizable distance geometry
• Title not available (Why is that?)
• A Euclidean distance matrix model for protein molecular conformation
• Geometric buildup algorithms for sensor network localization

Uses Software

• CNS

Recommendations

• Title not available (Why is that?) 👍 👎
• Title not available (Why is that?) 👍 👎
• Solving molecular distance geometry problems by global optimization algorithms 👍 👎
• Distance geometry optimization for protein structures 👍 👎
• Distance Geometry Methods for Protein Structure Determination 👍 👎
• Solving Molecular Distance Geometry Problems Using a Continuous Optimization Approach 👍 👎
• Distance Geometry in Structural Biology: New Perspectives 👍 👎
• On Protein Structure Alignment under Distance Constraint 👍 👎
• On protein structure alignment under distance constraint 👍 👎
• The discretizable molecular distance geometry problem 👍 👎

This page was built for publication: Solving a generalized distance geometry problem for protein structure determination

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q417280)