Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis

DOI10.1016/J.TCS.2012.01.024MaRDI QIDQ418747zbMATH OpenOpenAlexFDO

Authors R. Giancarlo, F. Utro

Publication date 30 May 2012

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2012.01.024

zbMATH Keywords

machine learningcomputational biologybioinformaticsalgorithms and data structuresanalysis of massive datasetsgeneral statistics

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Data structures (68P05) General biology and biomathematics (92B05)

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Cites work

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• scientific article; zbMATH DE number 3083043 (Why is no real title available?)
• A Method for Comparing Two Hierarchical Clusterings
• A Sober Look at Clustering Stability
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• Bagging predictors
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• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
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• Estimating the number of clusters in a data set via the gap statistic
• Extensions of Lipschitz mappings into a Hilbert space
• Finding Groups in Data
• Learning the parts of objects by non-negative matrix factorization
• On some significance tests in cluster analysis
• Problems and results in extremal combinatorics. II
• Resampling method for unsupervised estimation of cluster validity
• The Geometry of Information Retrieval
• The adjusted rand statistic: A SAS macro

Cited in

(7)

• DNA combinatorial messages and epigenomics: the case of chromatin organization and nucleosome occupancy in eukaryotic genomes
• An algorithm for deciding the number of clusters and validation using simulated data with application to exploring crop population structure
• scientific article; zbMATH DE number 1928681 (Why is no real title available?)
• Stability estimation for unsupervised clustering: a review
• Cluster structure inference based on clustering stability with applications to microarray data analysis
• Algorithmic and complexity issues of three clustering methods in microarray data analysis
• Bootstrapping cluster analysis: Assessing the reliability of conclusions from microarray experi\-ments.

Describes a project that uses

Uses Software

• clustervalidation
• GenClust
• clusfind
• bootstrap
• Mosclust
• SAS

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