scientific article; zbMATH DE number 1303210

zbMATH Open0924.65147MaRDI QIDQ4249733FDOQ4249733

Authors Neal Madras

Publication date 10 November 1999

zbMATH Keywords

Markov chainconvergenceimportance samplingphase transitionMetropolis algorithmMonte Carlo methodsIsing modelpolymer collapsesimulated temperingumbrella sampling

Mathematics Subject Classification ID

Probabilistic methods, stochastic differential equations (65C99) Markov chains (discrete-time Markov processes on discrete state spaces) (60J10) Phase transitions (general) in equilibrium statistical mechanics (82B26) Statistical mechanics of polymers (82D60)

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• Equi-energy sampling does not converge rapidly on the mean-field Potts model with three colors close to the critical temperature
• Dynamical Spatial Warping: A Novel Method for the Conformational Sampling of Biophysical Structure
• Adaptive umbrella sampling: Self-consistent determination of the non- Boltzmann bias
• Large deviations in Monte Carlo methods
• On swapping and simulated tempering algorithms.
• The swapping algorithm for the Hopfield model with two patterns
• Path sampling with stochastic dynamics: some new algorithms
• Enhanced sampling in simulations of dense systems
• The sample size required in importance sampling
• Multi-point nonequilibrium umbrella sampling and associated fluctuation relations
• Distance between configurations in Markov chain Monte Carlo simulations
• On the swapping algorithm
• Comparison of the parallel tempering algorithm and multicanonical method as applied to coarse-grained off-lattice models for folding heteropolymers
• Markov chain decomposition for convergence rate analysis
• Flux tempered metadynamics
• Determining efficient temperature sets for the simulated tempering method
• Self-healing umbrella sampling: convergence and efficiency
• Umbrella sampling in non-equilibrium computer simulations
• Simulated tempering and swapping on mean-field models

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