BIOLOGICAL DISTANCES ON DNA KNOTS AND LINKS: Applications to XER recombination

DOI10.1142/S0218216501000846zbMATH Open1011.92023MaRDI QIDQ4541012FDOQ4541012

Authors: Isabel K. Darcy 

Publication date: 30 July 2002

Published in: Journal of Knot Theory and Its Ramifications (Search for Journal in Brave)

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zbMATH Keywords

DNAtangles4-platsXer recombinase

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

Cites Work

• Some metrics on classical knots
• A calculus for rational tangles: applications to DNA recombination
• Rational tangle distances on knots and links
• TANGLE EQUATIONS
• The determination of the pairs of two-bridge knots or links with Gordian distance one

Cited In (21)

• SOLVING UNORIENTED TANGLE EQUATIONS INVOLVING 4-PLATS
• A 4-string tangle analysis of DNA-protein complexes based on difference topology
• A survey of \(n\)-string tangle analyses of DNA-enzyme synaptic complexes
• Tangle analysis of Gin site-specific recombination
• Modeling protein-DNA complexes with tangles
• DNA topology review
• Structure of symmetry group of some composite links and some applications
• Applications of knot theory: using knot theory to unravel biochemistry mysteries
• Rational tangle surgery and Xer recombination on catenanes
• Statistical topology of closed curves: some applications in polymer physics
• DNA topology: experiments and analysis
• Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases
• Recombination modification with \(X\)-linked characters
• Polymers with spatial or topological constraints: theoretical and computational results
• Topological analysis of Mu-transposition
• Links which are related by a band surgery or crossing change
• Tangle analysis of difference topology experiments: applications to a Mu protein-DNA complex
• Knot theory based on the minimal braid in Lorenz system
• Statics and dynamics of DNA knotting
• CLASSIFICATION OF TANGLE SOLUTIONS FOR INTEGRASES, A PROTEIN FAMILY THAT CHANGES DNA TOPOLOGY
• A mathematical model for enzymatic action on DNA knots and links

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