Identification of novel type III effectors using latent Dirichlet allocation

DOI10.1155/2012/696190zbMATH Open1401.92073DBLPjournals/cmmm/Yang12OpenAlexW2114893261WikidataQ36246536 ScholiaQ36246536MaRDI QIDQ454710FDOQ454710

Authors: Yang Yang 

Publication date: 10 October 2012

Published in: Computational \& Mathematical Methods in Medicine (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1155/2012/696190

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zbMATH Keywords

amino acid sequencesPseudomonas syringaetype III effectorstype III secretion system

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Cell biology (92C37)

Cites Work

• Variational inference for Dirichlet process mixtures
• 10.1162/jmlr.2003.3.4-5.993

Cited In (1)

• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition

Uses Software

• LIBSVM
• Matlab Topic Modeling Toolbox

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