Identification of novel type III effectors using latent Dirichlet allocation

DOI10.1155/2012/696190MaRDI QIDQ454710zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Yang Yang

Publication date 10 October 2012

Published in Computational \& Mathematical Methods in Medicine (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1155/2012/696190

zbMATH Keywords

amino acid sequencesPseudomonas syringaetype III effectorstype III secretion system

Mathematics Subject Classification ID

Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20) Cell biology (92C37)

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Cites work

• 10.1162/jmlr.2003.3.4-5.993
• Variational inference for Dirichlet process mixtures

Cited in

(1)

• SecretP: identifying bacterial secreted proteins by fusing new features into Chou's pseudo-amino acid composition

Describes a project that uses

Uses Software

• Matlab Topic Modeling Toolbox
• LIBSVM

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