A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data

DOI10.1007/S00285-011-0428-2MaRDI QIDQ455699zbMATHOpenAlexWikidataFDO

Authors Xingpeng Jiang, Joshua S. Weitz, Jonathan Dushoff

Publication date 22 October 2012

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial 4.0 International

Full work available at URL https://doi.org/10.1007/s00285-011-0428-2

zbMATH Keywords

microbial ecologyoverlapping clustersmetabolic profilespectral reordering

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Factorization of matrices (15A23) Probabilistic models, generic numerical methods in probability and statistics (65C20) Ecology (92D40)

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Cites work

• Learning the parts of objects by non-negative matrix factorization

Cited in

(2)

• Improving epidemic size prediction through stable reconstruction of disease parameters by reduced iteratively regularized Gauss-Newton algorithm
• On the estimation of metabolic profiles in metagenomics

Describes a project that uses

Uses Software

• NMF
• bioNMF
• RAST
• ONE
• MEGAN

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