A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data

DOI10.1007/S00285-011-0428-2zbMATH Open1252.92023OpenAlexW2123072153WikidataQ33918536 ScholiaQ33918536MaRDI QIDQ455699FDOQ455699

Authors: Xingpeng Jiang, Joshua S. Weitz, Jonathan Dushoff 

Publication date: 22 October 2012

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-011-0428-2

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zbMATH Keywords

microbial ecologyoverlapping clustersmetabolic profilespectral reordering

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Factorization of matrices (15A23) Probabilistic models, generic numerical methods in probability and statistics (65C20) Ecology (92D40)

Cites Work

• Learning the parts of objects by non-negative matrix factorization

Cited In (2)

• Improving epidemic size prediction through stable reconstruction of disease parameters by reduced iteratively regularized Gauss-Newton algorithm
• On the estimation of metabolic profiles in metagenomics

Uses Software

• NMF
• bioNMF
• RAST
• ONE
• MEGAN

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