A non-negative matrix factorization framework for identifying modular patterns in metagenomic profile data

DOI10.1007/s00285-011-0428-2zbMath1252.92023OpenAlexW2123072153WikidataQ33918536 ScholiaQ33918536MaRDI QIDQ455699

Xingpeng Jiang, Joshua S. Weitz, Jonathan Dushoff

Publication date: 22 October 2012

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s00285-011-0428-2

zbMATH Keywords

overlapping clustersmetabolic profilemicrobial ecologyspectral reordering

Mathematics Subject Classification ID

Factorization of matrices (15A23) Probabilistic models, generic numerical methods in probability and statistics (65C20) Biochemistry, molecular biology (92C40) Ecology (92D40)

Related Items (1)

Improving epidemic size prediction through stable reconstruction of disease parameters by reduced iteratively regularized Gauss-Newton algorithm

Uses Software

• NMF
• bioNMF
• RAST
• ONE
• MEGAN

Cites Work

• Learning the parts of objects by non-negative matrix factorization

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