Computational challenges in systems biology

DOI10.1016/J.COSREV.2009.01.002zbMATH Open1302.92042OpenAlexW1975586684MaRDI QIDQ458470FDOQ458470

Allison P. Heath, Lydia E. Kavraki

Publication date: 7 October 2014

Published in: Computer Science Review (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cosrev.2009.01.002

Mathematics Subject Classification ID

Systems biology, networks (92C42) Research exposition (monographs, survey articles) pertaining to biology (92-02)

Cites Work

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• Statistical mechanics of complex networks
• Emergence of Scaling in Random Networks
• The Structure and Function of Complex Networks
• Exploring complex networks
• The chemical basis of morphogenesis
• The algorithmic analysis of hybrid systems
• Introduction to Generalized Stochastic Petri Nets
• Hybrid Systems: Computation and Control
• Robustness and fragility of Boolean models for genetic regulatory networks
• Transactions on Computational Systems Biology III
• Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets
• The practitioner's guide to coloured Petri nets.
• Hybrid Systems: Computation and Control
• Computer Aided Verification
• Hybrid Systems: Computation and Control

Cited In (5)

• HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
• Convergence properties of posttranslationally modified protein-protein switching networks with fast decay rates
• Joint realizability of monotone Boolean functions
• Systems Biology: The Next Frontier for Bioinformatics
• HSimulator: hybrid stochastic/deterministic simulation of biochemical reaction networks

Uses Software

• MetaCyc
• Cytoscape
• COPASI
• BioModels
• KEGG
• BioGRID
• IntAct
• RegulonDB
• NeMoFinder
• Graemlin
• Dizzy

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