The minimum evolution problem in phylogenetics: polytopes, linear programming, and interpretation

DOI10.1016/B978-0-12-814066-6.00010-6MaRDI QIDQ4627744zbMATH OpenFDO

Authors Stefan Forcey, Gabriela Hamerlinck, Logan Keefe, William Sands

Publication date 11 March 2019

Published in Algebraic and Combinatorial Computational Biology (Search for Journal in Brave)

zbMATH Keywords

linear programmingdistance matrixbalanced minimum evolutionpolytopesphylogenetic trees

Mathematics Subject Classification ID

Linear programming (90C05) Problems related to evolution (92D15) Software, source code, etc. for problems pertaining to biology (92-04) Polytopes and polyhedra (52B99)

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Cited in

(4)

• The balanced minimum evolution problem
• Split network polytopes and network spaces
• Phylogenetic tree reconstruction: geometric approaches
• Phylogenetic flexibility via Hall-type inequalities and submodularity

Describes a project that uses

Uses Software

• polymake
• FastMe

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