The Minimum Evolution Problem in Phylogenetics: Polytopes, Linear Programming, and Interpretation

DOI10.1016/B978-0-12-814066-6.00010-6zbMATH Open1409.92173MaRDI QIDQ4627744FDOQ4627744

Gabriela Hamerlinck, William Sands, Logan Keefe, Stefan Forcey

Publication date: 11 March 2019

Published in: Algebraic and Combinatorial Computational Biology (Search for Journal in Brave)

zbMATH Keywords

linear programmingdistance matrixbalanced minimum evolutionpolytopesphylogenetic trees

Mathematics Subject Classification ID

Linear programming (90C05) Problems related to evolution (92D15) Software, source code, etc. for problems pertaining to biology (92-04) Polytopes and polyhedra (52B99)

Cited In (2)

• Phylogenetic flexibility via Hall-type inequalities and submodularity
• Split network polytopes and network spaces

Uses Software

• polymake
• FastMe

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