Toward revealing protein function: identifying biologically relevant clusters with graph spectral methods

DOI10.1016/B978-0-12-814066-6.00012-XzbMATH Open1409.92181OpenAlexW2908158848MaRDI QIDQ4627748FDOQ4627748

R. Davies, Jeff R. Knisley, Widodo Samyono, Urmi Ghosh-Dastidar

Publication date: 11 March 2019

Published in: Algebraic and Combinatorial Computational Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/b978-0-12-814066-6.00012-x

Recommendations

• Spectral clustering for detecting protein complexes in protein-protein interaction (PPI) networks
• SimDiv: A New Solution for Protein Comparison
• scientific article; zbMATH DE number 2033252
• Similarity analysis of protein sequences based on a new graphical representation method
• Spectral clustering

zbMATH Keywords

spectral clusteringprotein functiongraph partitioning algorithmprotein tertiary structure

Mathematics Subject Classification ID

Applications of graph theory (05C90) Protein sequences, DNA sequences (92D20)

Cited In (5)

• Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF- $$\beta $$ Signaling
• Extension and robustness of transitivity clustering for protein-protein interaction network analysis
• Rough Sets, Fuzzy Sets, Data Mining, and Granular Computing
• Spectral clustering and its use in bioinformatics
• SNFM: a semi-supervised NMF algorithm for detecting biological functional modules

This page was built for publication: Toward revealing protein function: identifying biologically relevant clusters with graph spectral methods

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4627748)