Analyzing Multiple‐Probe Microarray: Estimation and Application of Gene Expression Indexes

DOI10.1111/j.1541-0420.2012.01727.xzbMath1270.62149OpenAlexW2052603657WikidataQ37707908 ScholiaQ37707908MaRDI QIDQ4649055

Mehdi Maadooliat, Jianhua Z. Huang, Jianhua Hu

Publication date: 19 November 2012

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://epublications.marquette.edu/cgi/viewcontent.cgi?article=1119&context=mscs_fac

zbMATH Keywords

normalizationtransformation modelprofile likelihoodfold changedifferential expression detectionmultivariate expression index

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

Uses Software

• LBFGS-B

Cites Work

• The analysis of gene expression data. Methods and software
• A systematic statistical linear modeling approach to oligonucleotide array experiments
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• Fast computation of low-rank matrix approximations
• A Limited Memory Algorithm for Bound Constrained Optimization
• Singular Value Decomposition–Based Alternative Splicing Detection
• Exploration, normalization, and summaries of high density oligonucleotide array probe level data
• Estimation of Expression Indexes for Oligonucleotide Arrays Using the Singular Value Decomposition

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