An overview of multiple sequence alignments and cloud computing in bioinformatics

DOI10.1155/2013/615630zbMATH Open1300.92067OpenAlexW2022697156WikidataQ56698367 ScholiaQ56698367MaRDI QIDQ470592FDOQ470592

Authors: Jurate Daugelaite, Aisling O'Driscoll, Roy D. Sleator 

Publication date: 12 November 2014

Published in: ISRN Biomathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1155/2013/615630

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zbMATH Keywords

cloud computingmultiple sequence alignmentMSA algorithms

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

• Title not available (Why is that?)
• Optimal implementations of UPGMA and other common clustering algorithms

Cited In (4)

• Parallel algorithms to align multiple strings in the context of web data extraction
• Optimization of hadoop cluster for analyzing large-scale sequence data in bioinformatics
• Adaptation of the method of musical composition for solving the multiple sequence alignment problem
• Category theory for genetics. I: Mutations and sequence alignments

Uses Software

• MapReduce
• MAFFT
• Soap
• BlueSNP
• Biodoop
• MSAProbs
• 3DCoffee
• Expresso
• MICAlign
• PeakRanger
• Quake
• CloudBLAST
• ProbCons
• DIALIGN
• ClustalW
• SOAP3
• MrsRF
• GATK
• SeqWare
• Hadoop-BAM
• Eoulsan
• FX
• Seal
• CloudBurst
• CloudAligner
• MUSCLE
• Kalign
• T-coffee
• Jnomics
• k-means++
• Probalign
• Crossbow

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