An overview of multiple sequence alignments and cloud computing in bioinformatics

DOI10.1155/2013/615630MaRDI QIDQ470592zbMATH OpenOpenAlexWikidataFDO

Authors Jurate Daugelaite, Aisling O'Driscoll, Roy D. Sleator

Publication date 12 November 2014

Published in ISRN Biomathematics (Search for Journal in Brave)

Copyright license Creative Commons Attribution 3.0 Unported

Full work available at URL https://doi.org/10.1155/2013/615630

zbMATH Keywords

cloud computingmultiple sequence alignmentMSA algorithms

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 6381735 (Why is no real title available?)
• Optimal implementations of UPGMA and other common clustering algorithms

Cited in

(4)

• Parallel algorithms to align multiple strings in the context of web data extraction
• Optimization of hadoop cluster for analyzing large-scale sequence data in bioinformatics
• Adaptation of the method of musical composition for solving the multiple sequence alignment problem
• Category theory for genetics. I: Mutations and sequence alignments

Describes a project that uses

Uses Software

• Crossbow
• Probalign
• k-means++
• Jnomics
• T-coffee
• Kalign
• MUSCLE
• CloudAligner
• CloudBurst
• Seal
• FX
• Eoulsan
• Hadoop-BAM
• SeqWare
• GATK
• MrsRF
• SOAP3
• ClustalW
• DIALIGN
• ProbCons
• CloudBLAST
• Quake
• PeakRanger
• MICAlign
• Expresso
• 3DCoffee
• MSAProbs
• Biodoop
• BlueSNP
• Soap
• MAFFT
• MapReduce

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