Accounting for extrinsic variability in the estimation of stochastic rate constants

DOI10.1002/RNC.2804zbMATH Open1258.93106OpenAlexW1893911863MaRDI QIDQ4909334FDOQ4909334

Authors: Heinz Koeppl, Christoph Zechner, Arnab Ganguly, Serge Pelet, Matthias Peter 

Publication date: 13 March 2013

Published in: International Journal of Robust and Nonlinear Control (Search for Journal in Brave)

Full work available at URL: https://www.zora.uzh.ch/id/eprint/80946/1/Koeppl.pdf

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zbMATH Keywords

Bayesian estimationmass conservationstochastic chemical kineticscell-to-cell variabilityMAPK Hog1 signaling pathway

Mathematics Subject Classification ID

Cell biology (92C37) Control/observation systems governed by ordinary differential equations (93C15) Estimation and detection in stochastic control theory (93E10)

Cites Work

• Monte Carlo sampling methods using Markov chains and their applications
• Title not available (Why is that?)
• Bayesian inference for nonlinear multivariate diffusion models observed with error
• Stochastic approach to chemical kinetics
• Error analysis of tau-leap simulation methods

Cited In (6)

• Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: an application to single cell data
• Rate Constants and the Variation of Random Concentration Curves in a 2-Compartment System
• Method of conditional moments (MCM) for the chemical master equation
• Inferring stochastic rates from heterogeneous snapshots of particle positions
• Block-tridiagonal state-space realization of chemical master equations: a tool to compute explicit solutions
• Estimating intrinsic and extrinsic noise from single-cell gene expression measurements

Uses Software

• PRMLT

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