Upper bounds on the minimum length of cubic lattice knots

DOI10.1088/1751-8113/46/12/125001zbMATH Open1339.57019arXiv1411.1849OpenAlexW2964005064MaRDI QIDQ4920451FDOQ4920451

Authors: Kyungpyo Hong, Sungjong No, Seungsang Oh 

Publication date: 17 May 2013

Published in: Journal of Physics A: Mathematical and Theoretical (Search for Journal in Brave)

Abstract: Knots have been considered to be useful models for simulating molecular chains such as DNA and proteins. One quantity that we are interested on molecular knots is the minimum number of monomers necessary to realize a knot. In this paper we consider every knot in the cubic lattice. Especially the minimal length of a knot indicates the minimum length necessary to construct the knot in the cubic lattice. Diao introduced this term (he used "minimal edge number" instead) and proved that the minimal length of the trefoil knot $3_1$ is $24$. Also the minimal lengths of the knots $4_1$ and $5_1$ are known to be $30$ and $34$, respectively. In the article we find a general upper bound of the minimal length of a nontrivial knot $K$, except the trefoil knot, in terms of the minimal crossing number $c(K)$. The upper bound is $frac32c(K{)}^2+2c(K)+frac12$. Moreover if $K$ is a non-alternating prime knot, then the upper bound is $frac32c(K{)}^2-4c(K)+frac52$. Furthermore if $K$ is $(n+1,n)$-torus knot, then the upper bound is $6c(K)+2sqrtc(K)+1+6$.

Full work available at URL: https://arxiv.org/abs/1411.1849

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Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cited In (10)

• MINIMAL KNOTS IN THE CUBIC LATTICE
• Ribbonlength and crossing number for folded ribbon knots
• Minimum lattice length and ropelength of knots
• THE LOWER BOUNDS OF THE LENGTHS OF THICK KNOTS
• Bounds for minimum step number of knots confined to tubes in the simple cubic lattice
• The number of smallest knots on the cubic lattice
• On the dominance of trivial knots among SAPs on a cubic lattice
• Bounds for the minimum step number of knots confined to slabs in the simple cubic lattice
• Bounds for the minimum step number of knots in the simple cubic lattice
• Minimum lattice length and ropelength of 2-bridge knots and links

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