Text searching allowing for inversions and translocations of factors

DOI10.1016/J.DAM.2013.05.016MaRDI QIDQ496536zbMATHOpenAlexFDO

Authors Domenico Cantone, Simone Faro, Emanuele Giaquinta

Publication date 22 September 2015

Published in Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.dam.2013.05.016

zbMATH Keywords

analysis of algorithmscomputational biologyapproximate string matchingtext processinginversions and translocations

Mathematics Subject Classification ID

Analysis of algorithms and problem complexity (68Q25) Algorithms on strings (68W32)

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Cites work

• scientific article; zbMATH DE number 801745 (Why is no real title available?)
• scientific article; zbMATH DE number 3240929 (Why is no real title available?)
• Efficient string-matching allowing for non-overlapping inversions
• New and faster filters for multiple approximate string matching
• Simple and efficient string matching with k mismatches
• String matching with inversions and translocations in linear average time (most of the time)
• The smallest automaton recognizing the subwords of a text
• Transducers and repetitions

Cited in

(5)

• Sequence searching allowing for non-overlapping adjacent unbalanced translocations
• A graph-theoretic model to solve the approximate string matching problem allowing for translocations
• String matching with inversions and translocations in linear average time (most of the time)
• String matching with involutions
• A graph theoretic model to solve the approximate string matching problem allowing for translocations

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