Analysis and design of molecular machines

DOI10.1016/J.TCS.2015.01.030MaRDI QIDQ498934zbMATH OpenOpenAlexDBLPWikidataFDO

Authors J. Costanza, G. Carapezza, Claudio Angione, Pietro Lio, Giuseppe Nicosia

Publication date 29 September 2015

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2015.01.030

zbMATH Keywords

Pareto optimalityPetri netsTuring machine\textit{E. coli} modellingbiological complexityflux-balance analysismolecular machineregister machinestrade-off genetic strategiesvon Neumann architectures

Mathematics Subject Classification ID

Systems biology, networks (92C42) Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

Recommendations

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Cites work

• scientific article; zbMATH DE number 3310089 (Why is no real title available?)
• Cellular computing.
• Computation in gene networks
• Computation with finite stochastic chemical reaction networks
• Confusion of memory
• From Turing machines to computer viruses
• Petri nets for modelling metabolic pathways: a survey
• The complexity of small universal Turing machines: A survey
• The computational power of Benenson automata
• Weak Time Petri Nets Strike Back!

Cited in

(1)

• Metabolic pathway analysis using a Nash equilibrium approach

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Uses Software

• QSSPN

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