Discretization vertex orders in distance geometry
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Publication:499358
DOI10.1016/j.dam.2014.08.035zbMath1321.05029OpenAlexW2017850362WikidataQ62562138 ScholiaQ62562138MaRDI QIDQ499358
Oktay Günlük, Leo Liberti, Andrea Cassioli, Carlile C. Lavor
Publication date: 30 September 2015
Published in: Discrete Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.dam.2014.08.035
Combinatorial aspects of finite geometries (05B25) Graph algorithms (graph-theoretic aspects) (05C85) Signed and weighted graphs (05C22)
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Cites Work
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- Geometric science of information. First international conference, GSI 2013, Paris, France, August 28--30, 2013. Proceedings
- Discretization orders for distance geometry problems
- The discretizable molecular distance geometry problem
- Molecular modeling and simulation. An interdisciplinary guide
- Combining variable neighborhood search and estimation of distribution algorithms in the protein side chain placement problem
- A geometric build-up algorithm for solving the molecular distance geometry problem with sparse distance data
- The discretizable distance geometry problem
- Recent advances on the discretizable molecular distance geometry problem
- The interval branch-and-prune algorithm for the discretizable molecular distance geometry problem with inexact distances
- On the number of realizations of certain Henneberg graphs arising in protein conformation
- The Discretizable Molecular Distance Geometry Problem seems Easier on Proteins
- Distance Geometry
- Molecular distance geometry methods: from continuous to discrete
- A Branch‐and‐Prune algorithm for the Molecular Distance Geometry Problem
- Euclidean Distance Geometry and Applications
- Counting the Number of Solutions of KDMDGP Instances
- On the Identification of Discretization Orders for Distance Geometry with Intervals