On quantitative comparison of chemical reaction network models

MaRDI QIDQ5016381zbMATH OpenFDO

Authors Ozan Kahramanoğulları

Publication date 13 December 2021

Full work available at URL https://arxiv.org/abs/1907.04319, http://eptcs.web.cse.unsw.edu.au/paper.cgi?HCVSPERR2019.5

Mathematics Subject Classification ID

Biologically inspired models of computation (DNA computing, membrane computing, etc.) (68Q07)

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Cites work

• A process model of Rho GTP-binding proteins
• Abstract Semantic Diffing of Evolving Concurrent Programs
• On linear logic planning and concurrency
• Petri nets, event structures and domains. I

Cited in

(14)

• Formal quantitative analysis of reaction networks using chemical organisation theory
• Nets with mana: a framework for chemical reaction modelling
• A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks
• Comparing chemical reaction networks: a categorical and algorithmic perspective
• Comparison theorems for stochastic chemical reaction networks
• Static and dynamic complex models: comparison and application to chemical systems
• Comparing Chemical Reaction Networks
• The Gompertz model revisited and modified using reaction networks: Mathematical analysis
• Syntactic Markovian bisimulation for chemical reaction networks
• Forward and backward bisimulations for chemical reaction networks
• Semi-quantitative abstraction and analysis of chemical reaction networks
• Embedding-based comparison of reaction networks of Wnt signaling
• The distance between: an algorithmic approach to comparing stochastic models to time-series data
• Equilibria decomposition-based comparison of reaction networks of wnt signaling

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