Possible role of interference, protein noise, and sink effects in nonphotochemical quenching in photosynthetic complexes

DOI10.1007/S00285-016-1016-2MaRDI QIDQ504057zbMATH OpenOpenAlexWikidataFDO

Authors G. P. Berman, A. I. Nesterov, Shmuel Gurvitz, Richard T. Sayre

Publication date 25 January 2017

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1412.3499

zbMATH Keywords

noisenon-Hermitian Hamiltonianelectron transfersinkphotosynthetic complexes

Mathematics Subject Classification ID

Chemistry (92E99) Molecular physics (81V55)

Abstract: We describe a simple and consistent quantum mathematical model that simulates the possible role of quantum interference and sink effects in the nonphotochemical quenching (NPQ) in light-harvesting complexes (LHCs). Our model consists of a network of five interconnected sites (excitonic states) responsible for the NPQ mechanism: (i) Two excited states of chlorophyll molecules, $Chl{A}^{\ast }$ and $Chl{B}^{\ast }$, forming an LHC dimer, which is initially populated; (ii) A "damaging" site which is responsible for production of singlet oxygen and other destructive outcomes; (iii) The $(ChlA-Zea{)}^{\ast }$ heterodimer excited state (Zea indicates zeaxanthin); and (iv) The charge transfer state of this heterodimer, $(Chl{A}^{-}-Ze{a}^{+}{)}^{\ast }$. In our model, both damaging and charge transfer states are described by discrete electron energy levels attached to their sinks, that mimic the continuum part of electron energy spectrum, as at these sites the electron participates in quasi-irreversible chemical reactions. All five excitonic sites interact with the protein environment that is modeled using a stochastic approach. As an example, we apply our model to demonstrate possible contributions of quantum interference and sink effects in the NPQ mechanism in the CP29 minor LHC. Our numerical results on the quantum dynamics of the reduced density matrix, demonstrate a possible way to significantly suppress, under some conditions, the damaging channel using quantum interference effects and sinks. The results demonstrate the possible role of interference and sink effects for modeling, engineering, and optimizing the performance of the NPQ processes in both natural and artificial light-harvesting complexes.

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Cites work

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Cited in

(6)

• Emission spectra of LH2 complex: full Hamiltonian model
• Dynamics of a chlorophyll dimer in collective and local thermal environments
• Pseudomode approach and vibronic non-Markovian phenomena in light-harvesting complexes
• Theory of exciton annihilation in complexes of a finite number of molecular sites
• Non-photochemical quenching kinetics during the dark to light transition in relation to the formation of antheraxanthin and zeaxanthin
• Could structural similarity of specific domains between animal globins and plant antenna proteins provide hints important for the photoprotection mechanism?

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