Topological data analysis reveals principles of chromosome structure in cellular differentiation

DOI10.4230/LIPICS.WABI.2019.23MaRDI QIDQ5091747zbMATH OpenOpenAlexFDO

Authors Natalie Sauerwald, Yihang Shen, Carl Kingsford

Publication date 27 July 2022

Full work available at URL https://doi.org/10.4230/LIPIcs.WABI.2019.23

zbMATH Keywords

chromosome structurehi-Ctopological data analysistopologically associating domains

Mathematics Subject Classification ID

Topological data analysis (62R40) Computational methods for problems pertaining to biology (92-08) Genetics and epigenetics (92D10)

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Cites work

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• Topological data analysis of single-cell Hi-C contact maps
• Topological pattern recognition for point cloud data
• Topology of viral evolution

Cited in

(11)

• A novel family of space-filling curves in their relation to chromosome conformation in eukaryotes
• Diffdomain enables identification of structurally reorganized topologically associating domains
• DNA topology in chromosomes: a quantitative survey and its physiological implications
• Topological data analysis approaches to uncovering the timing of ring structure onset in filamentous networks
• scientific article; zbMATH DE number 2040657 (Why is no real title available?)
• Topological Data Analysis for Genomics and Evolution
• A topological data analysis approach on predicting phenotypes from gene expression data
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• Relational persistent homology for multispecies data with application to the tumor microenvironment

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