Sparse inverse covariance estimation for high-throughput microRNA sequencing data in the Poisson log-normal graphical model

DOI10.1080/00949655.2019.1657116MaRDI QIDQ5107510zbMATH OpenOpenAlexWikidataFDO

Authors David Sinclair, Giles Hooker

Publication date 27 April 2020

Published in Journal of Statistical Computation and Simulation (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/1708.04490

zbMATH Keywords

EM algorithmgraphical LassomiRNAPoisson network

Mathematics Subject Classification ID

Estimation in multivariate analysis (62H12) Image analysis in multivariate analysis (62H35)

Cites work

• A Bayesian graphical modeling approach to microRNA regulatory network inference
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• High-dimensional Ising model selection using \(\ell _{1}\)-regularized logistic regression
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• Markov random fields and their applications
• Sparse estimation of multivariate Poisson log‐normal models from count data
• Sparse inverse covariance estimation with the graphical lasso
• Statistical mechanics of complex networks
• The huge Package for High-dimensional Undirected Graph Estimation in R
• The multivariate Poisson-log normal distribution

Cited in

(2)

• A heavy-tailed model for analyzing miRNA-seq raw read counts
• Negative binomial graphical model with excess zeros

Describes a project that uses

Uses Software

• R
• S-PLUS
• glasso
• huge
• XMRF

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