Small-space LCE data structure with constant-time queries

DOI10.4230/LIPICS.MFCS.2017.10MaRDI QIDQ5111224zbMATHOpenAlexFDO

Authors Yuka Tanimura, Takaaki Nishimoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda

Publication date 26 May 2020

Full work available at URL https://arxiv.org/abs/1702.07458

zbMATH Keywords

longest common extension\(t\)-coverstruncated suffix trees

Mathematics Subject Classification ID

Data structures (68P05) Coding and information theory (compaction, compression, models of communication, encoding schemes, etc.) (aspects in computer science) (68P30)

Abstract: The emph{longest common extension} (emph{LCE}) problem is to preprocess a given string $w$ of length $n$ so that the length of the longest common prefix between suffixes of $w$ that start at any two given positions is answered quickly. In this paper, we present a data structure of $O(za{u}^2+fracnau)$ words of space which answers LCE queries in $O(1)$ time and can be built in $O(nlogsigma)$ time, where $1leqauleqsqrtn$ is a parameter, $z$ is the size of the Lempel-Ziv 77 factorization of $w$ and $sigma$ is the alphabet size. This is an emph{encoding} data structure, i.e., it does not access the input string $w$ when answering queries and thus $w$ can be deleted after preprocessing. On top of this main result, we obtain further results using (variants of) our LCE data structure, which include the following: - For highly repetitive strings where the $za{u}^2$ term is dominated by $fracnau$, we obtain a emph{constant-time and sub-linear space} LCE query data structure. - Even when the input string is not well compressible via Lempel-Ziv 77 factorization, we still can obtain a emph{constant-time and sub-linear space} LCE data structure for suitable $au$ and for $sigmaleq{2}^{o(logn)}$. - The time-space trade-off lower bounds for the LCE problem by Bille et al. [J. Discrete Algorithms, 25:42-50, 2014] and by Kosolobov [CoRR, abs/1611.02891, 2016] can be "surpassed" in some cases with our LCE data structure.

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