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abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation

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Publication:5111814
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DOI10.4230/LIPICS.WABI.2017.15zbMATH Open1443.92143MaRDI QIDQ5111814FDOQ5111814

Shunfu Mao, Sreeram Kannan, David N. C. Tse, K. Ramachandran, S. Mohajer

Publication date: 27 May 2020





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  • scientific article; zbMATH DE number 1877046


zbMATH Keywords

RNA-seqabundance estimationmultiply mapped readsrepetitive regionSNP calling


Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)



Cited In (1)

  • abSNP

Uses Software

  • STAR
  • RSEM
  • VarScan
  • SNVMix
  • RNASeqReadSimulator
  • GlfMultiples
  • Sniper





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