abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation

DOI10.4230/LIPICS.WABI.2017.15MaRDI QIDQ5111814zbMATH OpenFDO

Authors Shunfu Mao, S. Mohajer, K. Ramachandran, David N. C. Tse, Sreeram Kannan

Publication date 27 May 2020

Full work available at URL https://doi.org/10.4230/LIPICS.WABI.2017.15

zbMATH Keywords

RNA-seqabundance estimationmultiply mapped readsrepetitive regionSNP calling

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Software, source code, etc. for problems pertaining to biology (92-04)

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Cited in

(1)

• abSNP

Describes a project that uses

Uses Software

• Sniper
• GlfMultiples
• RNASeqReadSimulator
• SNVMix
• VarScan
• RSEM
• STAR

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