SNP selection for predicting a quantitative trait

DOI10.1080/02664763.2012.750282MaRDI QIDQ5128941zbMATH OpenOpenAlexFDO

Authors

Publication date 26 October 2020

Published in Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/02664763.2012.750282

zbMATH Keywords

variable selectiongenetic associationLASSOleast angle regressionSNPssparse partial least squares regression

Mathematics Subject Classification ID

Statistics (62-XX)

Recommendations

• Statistical models for the prediction of genetic values
• Methods for analysis and visualization of SNP genotype data for complex diseases
• Estimating effects and making predictions from genome-wide marker data
• Kernel methods and haplotypes used in selection of sparse DNA markers for protein yield in dairy cattle
• Identifying Genes Associated with a Quantitative Trait or Quantitative Trait Locus via Selective Transcriptional Profiling

Cites work

• scientific article; zbMATH DE number 3841083 (Why is no real title available?)
• scientific article; zbMATH DE number 708500 (Why is no real title available?)
• scientific article; zbMATH DE number 845714 (Why is no real title available?)
• An Empirical Bayes Method for Estimating Epistatic Effects of Quantitative Trait Loci
• Generalized genetic association study with samples of related individuals
• Least angle regression. (With discussion)
• On Lasso for censored data
• Sparse partial least squares regression for simultaneous dimension reduction and variable selection

Cited in

(7)

• Accuracy and sensitivity of different Bayesian methods for genomic prediction using simulation and real data
• Kernel methods and haplotypes used in selection of sparse DNA markers for protein yield in dairy cattle
• A population based confidence set inference method for SNPs that regulate quantitative phenotypes
• Statistical models for the prediction of genetic values
• Estimating effects and making predictions from genome-wide marker data
• Study on constructing core collections based on plant molecular markers and quantitative traits
• Analysis of phenotypic- and estimated breeding values (EBV) to dissect the genetic architecture of complex traits in a Scots pine three-generation pedigree design

Describes a project that uses

Uses Software

• bootstrap
• alr3
• R

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