PLS generalized linear regression and kernel multilogit algorithm (KMA) for microarray data classification problem

DOI10.15446/RCE.V43N2.81811MaRDI QIDQ5140670zbMATH OpenOpenAlexFDO

Authors Adolphus Wagala, Rogelio Q. Ramos, Oscar Dalmau, Graciela González-Farías

Publication date 16 December 2020

Published in Revista Colombiana de Estadística (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://arxiv.org/abs/1906.08110

zbMATH Keywords

generalized linear regressionkernel multilogit algorithmmicroarray data classificationpartial least squares

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Generalized linear models (logistic models) (62J12)

Abstract: We implement extensions of the partial least squares generalized linear regression (PLSGLR) due to Bastien et al. (2005) through its combination with logistic regression and linear discriminant analysis, to get a partial least squares generalized linear regression-logistic regression model (PLSGLR-log), and a partial least squares generalized linear regression-linear discriminant analysis model (PLSGLRDA). These two classification methods are then compared with classical methodologies like the k-nearest neighbours (KNN), linear discriminant analysis (LDA), partial least squares discriminant analysis (PLSDA), ridge partial least squares (RPLS), and support vector machines(SVM). Furthermore, we implement the kernel multilogit algorithm (KMA) by Dalmau et al. (2015)and compare its performance with that of the other classifiers. The results indicate that for both un-preprocessed and preprocessed data, the KMA has the lowest classification error rates.

Recommendations

• PLS Dimension Reduction for Classification with Microarray Data
• Kernel logistic PLS: a tool for supervised nonlinear dimensionality reduction and binary classifi\-cation
• On partial least squares dimension reduction for microarray-based classification: a simulation study
• Sparse partial least squares classification for high dimensional data
• An extensive comparison of recent classification tools applied to microarray data

Cited in

(3)

• Kernel logistic PLS: a tool for supervised nonlinear dimensionality reduction and binary classifi\-cation
• Borrowing information from relevant microarray studies for sample classification using weighted partial least squares
• Comparing the linear and the logistic PLS regression with qualitative predictors: application to allelotyping data

This page was built for publication: PLS generalized linear regression and kernel multilogit algorithm (KMA) for microarray data classification problem

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5140670)