DNA cyclic codes over rings

DOI10.3934/AMC.2017004zbMATH Open1357.94090arXiv1505.06263OpenAlexW2587975760MaRDI QIDQ514525FDOQ514525

Nabil Bennenni, Kenza Guenda, Sihem Mesnager

Publication date: 9 March 2017

Published in: Advances in Mathematics of Communications (Search for Journal in Brave)

Abstract: This paper is dealing with DNA cyclic codes which play an important role in DNA computing and have attracted a particular attention in the literature. Firstly, we introduce a new family of DNA cyclic codes over the ring $R=mathbb{F}_2[u]/(u^6)$. Such codes have theoretical advantages as well as several applications in DNA computing. A direct link between the elements of such a ring and the $64$ codons used in the amino acids of the living organisms is established. Such a correspondence allows us to extend the notion of the edit distance to the ring $R$ which is useful for the correction of the insertion, deletion and substitution errors. Next, we define the Lee weight, the Gray map over the ring $R$ as well as the binary image of the cyclic DNA codes allowing the transfer of studying DNA codes into studying binary codes. Secondly, we introduce another new family of DNA skew cyclic codes constructed over the ring $ildeR=mathbb{F}_2+vmathbb{F}_2=0,1,v,v+1$ where $v^2=v$ and study their property of being reverse-complement. We show that the obtained code is derived from the cyclic reverse-complement code over the ring $ildeR$. We shall provide the binary images and present some explicit examples of such codes.

Full work available at URL: https://arxiv.org/abs/1505.06263

zbMATH Keywords

binary image of DNA codesDNA cyclic codesDNA skew cyclic codesthe reverse-complement skew cyclic codes

Mathematics Subject Classification ID

Algebraic coding theory; cryptography (number-theoretic aspects) (11T71) Cyclic codes (94B15)

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Cited In (13)

• DNA computing over the ring ℤ4[v]/〈v2 − v〉
• $\mathbb{Z}_{q}(\mathbb{Z}_{q}+u\mathbb{Z}_{q})$-Linear Skew Constacyclic Codes
• DNA cyclic codes over the ring 𝔽2[u,v]/〈u2 − 1,v3 − v,uv − vu〉
• Some skew constacyclic codes over \(\mathbb{F}_q+u\mathbb{F}_q\)
• Title not available (Why is that?)
• ON THE REVERSE AND REVERSE COMPLEMENT CODES OVER THE FINITE RING F_4+uF_4+ u^2F_4
• DNA codes over two noncommutative rings of order four
• Cyclic DNA codes over the ring \(\mathbb {F}_2+u\mathbb {F}_2+v\mathbb {F}_2+uv\mathbb {F}_2+v^2\mathbb {F}_2+uv^2\mathbb {F}_2\)
• DNA codes over finite local Frobenius non-chain rings of length 5 and nilpotency index 4
• Cyclic DNA codes over the ring $\mathbb{Z}_4+u\mathbb{Z}_4+u^2\mathbb{Z}_4$
• The cyclic genetic code as a constraint satisfaction problem
• Construction of cyclic DNA codes over \(\mathrm{Z}_4 R\)
• SKEW-CONSTACYCLIC CODES OVER

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