Flexible statistical modelling of the occurrences of transcription factor binding sites along a DNA sequence

DOI10.17654/AS053060659zbMATH Open1422.62185OpenAlexW2904520045WikidataQ128746246 ScholiaQ128746246MaRDI QIDQ5229486FDOQ5229486

Authors Gabriel Kallah-Dagadu, B. K. Nkansah, Nathaniel K. Howard

Publication date 15 August 2019

Published in Advances and Applications in Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.17654/as053060659

zbMATH Keywords

point processesmultivariate Hawkes modelinteraction among transcription factorstranscription factors binding sites

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Estimation in multivariate analysis (62H12) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 700016 (Why is no real title available?)
• Adaptive estimation for Hawkes processes; application to genome analysis
• An Introduction to the Theory of Point Processes
• Econometrics of financial high-frequency data
• Exact distribution of word occurrences in a random sequence of letters
• FADO: A Statistical Method to Detect Favored or Avoided Distances between Occurrences of Motifs using the Hawkes' Model
• Lasso and probabilistic inequalities for multivariate point processes
• Multivariate Hawkes processes: an application to financial data
• Spectra of some self-exciting and mutually exciting point processes
• Stability of nonlinear Hawkes processes
• The intersite distances between pattern occurrences in strings generated by general discrete- and continuous-time models: an algorithmic approach
• Transforming spatial point processes into Poisson processes

Cited in

(6)

• A statistical model for investigating binding probabilities of DNA nucleotide sequences using microarrays
• Probabilistic graphical modelling of causal effects among the occurrences of transcription factors in DNA sequence
• Statistical inference for DNA sequences of promoters: a non-stationary qualitative model
• FADO: A Statistical Method to Detect Favored or Avoided Distances between Occurrences of Motifs using the Hawkes' Model
• Bayesian Clustering of Transcription Factor Binding Motifs
• Reference point logistic regression and the identification of DNA functional sites

Describes a project that uses

Uses Software

• PtProcess
• ppstat

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