A Bayesian integrative approach for multi-platform genomic data: a kidney cancer case study

DOI10.1111/BIOM.12587MaRDI QIDQ5283319zbMATH OpenOpenAlexWikidataFDO

Authors Thierry Chekouo, James D. Doecke, Kim-Anh Do, Francesco C. Stingo

Publication date 21 July 2017

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/biom.12587

zbMATH Keywords

Bayesian variable selectionMarkov random fieldnon-local priorintegrating multi-regressionsmulti-platform genomic data

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• scientific article; zbMATH DE number 597911 (Why is no real title available?)
• A Bayesian graphical modeling approach to microRNA regulatory network inference
• A review of survival trees
• A stagewise rejective multiple test procedure based on a modified Bonferroni test
• An investigation of missing data methods for classification trees applied to binary response data
• Bayesian inference of multiple Gaussian graphical models
• Bayesian model selection in high-dimensional settings
• Bayesian variable selection in structured high-dimensional covariate spaces with applications in genomics
• Bayesian wavelet-based curve classification via discriminant analysis with Markov random tree priors
• Cross-validation prior choice in Bayesian probit regression with many covariates
• Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
• The Calculation of Posterior Distributions by Data Augmentation
• miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer

Cited in

(12)

• Radio-iBAG: radiomics-based integrative Bayesian analysis of multiplatform genomic data
• Sliced inverse regression for integrative multi-omics data analysis
• A Bayesian group selection with compositional responses for analysis of radiologic tumor proportions and their genomic determinants
• miRNA-target gene regulatory networks: a Bayesian integrative approach to biomarker selection with application to kidney cancer
• Bayesian group selection with non-local priors
• Integration of survival data from multiple studies
• Integrative analysis of multiple types of genomic data using an accelerated failure time frailty model
• Statistical modeling strategies for linking multiple molecular sources to time-to-event endpoints
• Bayesian simultaneous factorization and prediction using multi-omic data
• Identification of breast cancer prognosis markers via integrative analysis
• Feature selection for data integration with mixed multiview data
• A statistical framework for data integration through graphical models with application to cancer genomics

Describes a project that uses

Uses Software

• iBAG

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