Automated Parallel and Body-Fitted Mesh Generation in Finite Element Simulation of Macromolecular Systems

DOI10.4208/cicp.161114.021015azbMath1388.65175MaRDI QIDQ5372473

Tiantian Liu, Linbo Zhang, Bin Tu, Yan Xie, Benzhuo Lu

Publication date: 27 October 2017

Published in: Communications in Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.4208/cicp.161114.021015a

Mathematics Subject Classification ID

65N30: Finite element, Rayleigh-Ritz and Galerkin methods for boundary value problems involving PDEs

92C40: Biochemistry, molecular biology

65Y05: Parallel numerical computation

65N50: Mesh generation, refinement, and adaptive methods for boundary value problems involving PDEs

Uses Software

• METIS
• PHG
• PDB2PQR
• iso2mesh
• TMSmesh
• phgSurfaceCut
• Medit