Spatial calculus of looping sequences

DOI10.1016/J.ENTCS.2009.02.003MaRDI QIDQ5404072zbMATHOpenAlexFDO

Authors Roberto Barbuti, Andrea Maggiolo-Schettini, Paolo Milazzo, Giovanni Pardini

Publication date 21 March 2014

Published in Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.entcs.2009.02.003

zbMATH Keywords

systems biologyspatial modelingcalculus of looping sequences

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Systems biology, networks (92C42)

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Cites work

• scientific article; zbMATH DE number 1794358 (Why is no real title available?)
• scientific article; zbMATH DE number 5051639 (Why is no real title available?)
• A Core Calculus for a Comparative Analysis of Bio-inspired Calculi
• A mathematical model for quorum sensing in \textit{Pseudomonas aeruginosa}
• A spatial extension to the \(\pi\) calculus
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• BioAmbients: an abstraction for biological compartments
• Computational Methods in Systems Biology
• Formal molecular biology
• MGS: a rule-based programming language for complex objects and collections
• Membrane computing. An introduction.
• Modelling biochemical pathways through enhanced \(\pi\)-calculus
• Stochastic bigraphs

Cited in

(11)

• Spatial P systems
• A calculus of looping sequences with local rules
• Stochastic Calculus of Looping Sequences for the Modelling and Simulation of Cellular Pathways
• Translating stochastic CLS into Maude
• Foundational aspects of multiscale modeling of biological systems with process algebras
• Modelling biochemical pathways with the calculus of looping sequences
• Identification of components in biochemical pathways: extensive aqpplication to SBML models
• The Calculus of Looping Sequences for Modeling Biological Membranes
• A calculus of located entities
• Spatial calculus of looping sequences
• Bio-PEPAd: a non-Markovian extension of Bio-PEPA

Describes a project that uses

Uses Software

• PRISM
• BioSPI
• MGS

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