Process algebra with hooks for models of pattern formation

DOI10.1016/J.ENTCS.2010.12.004MaRDI QIDQ5404085zbMATH OpenOpenAlexDBLPWikidataFDO

Authors A. Degasperi, M. Calder

Publication date 21 March 2014

Published in Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.entcs.2010.12.004

zbMATH Keywords

pattern formationprocess algebralabelled transition systemgeometrical space

Mathematics Subject Classification ID

Developmental biology, pattern formation (92C15) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

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Cites work

• A process algebra framework for multi-scale modelling of biological systems
• Application of a stochastic name-passing calculus to representation and simulation of molecular processes
• Bio-PEPA: A framework for the modelling and analysis of biological systems
• BioAmbients: an abstraction for biological compartments
• Brane Calculi
• Computational Methods in Systems Biology
• Process Algebra Modelling Styles for Biomolecular Processes
• Rule-Based Modelling of Cellular Signalling
• State-Aware Performance Analysis with eXtended Stochastic Probes
• Tailoring and coupling of reaction-diffusion systems to obtain reproducible complex pattern formation during development of the higher organisms
• The chemical basis of morphogenesis

Cited in

(3)

• Foundational aspects of multiscale modeling of biological systems with process algebras
• Process Algebra Models of Population Dynamics
• A process algebra framework for multi-scale modelling of biological systems

Describes a project that uses

Uses Software

• PEPA
• BIOCHAM
• Bio-PEPA

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