Quantitative model refinement as a solution to the combinatorial size explosion of biomodels

DOI10.1016/J.ENTCS.2012.05.014MaRDI QIDQ5404094zbMATH OpenOpenAlexWikidataFDO

Authors Elena Czeizler, Eugen Czeizler, Bogdan Iancu, Ion Petre

Publication date 21 March 2014

Published in Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.entcs.2012.05.014

zbMATH Keywords

quantitative analysismodel refinementheat shock responseacetylation

Mathematics Subject Classification ID

Systems biology, networks (92C42)

Recommendations

• An excursion through quantitative model refinement
• Fit-preserving data refinement of mass-action reaction networks
• Self-assembly models of variable resolution
• Composition colored Petri nets for the refinement of reaction-based models
• Rule-Based Modelling, Symmetries, Refinements

Cites work

• scientific article; zbMATH DE number 108007 (Why is no real title available?)
• scientific article; zbMATH DE number 863490 (Why is no real title available?)
• scientific article; zbMATH DE number 2229941 (Why is no real title available?)
• Program development by stepwise refinement
• Rule-based modelling and tunable resolution
• Self-assembly models of variable resolution

Cited in

(9)

• Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach
• A foundational framework for step-by-step model construction
• Fit-preserving data refinement of mass-action reaction networks
• Complete characterization for the fit-preserving data refinement of mass-action reaction networks
• Combining refinement and signal-temporal logic for biological systems
• Self-assembly models of variable resolution
• Reaction-based models of biochemical networks
• ODE Analysis of Biological Systems
• An excursion through quantitative model refinement

This page was built for publication: Quantitative model refinement as a solution to the combinatorial size explosion of biomodels

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5404094)