Pausing and backtracking in transcription under dense traffic conditions

DOI10.1007/s10955-011-0120-3zbMath1216.82009WikidataQ63944900 ScholiaQ63944900MaRDI QIDQ540563

Stefan Klumpp

Publication date: 3 June 2011

Published in: Journal of Statistical Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10955-011-0120-3

zbMATH Keywords

exclusion process; cooperativity; RNA polymerase; traffic models

Mathematics Subject Classification ID

92D20: Protein sequences, DNA sequences

82B41: Random walks, random surfaces, lattice animals, etc. in equilibrium statistical mechanics

82B20: Lattice systems (Ising, dimer, Potts, etc.) and systems on graphs arising in equilibrium statistical mechanics

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A biologically inspired two-species exclusion model: effects of RNA polymerase motor traffic on simultaneous DNA replication, RNA polymerase interactions and elongation rate, Deterministic and stochastic descriptions of gene expression dynamics, Bi-directional traffic of molecular motors in two antiparallel lanes with asymmetric lane changing rates, Operon dynamics with state dependent transcription and/or translation delays, A traffic flow model for bio-polymerization processes, A multispecies exclusion model inspired by transcriptional interference, First-passage processes on a filamentous track in a dense traffic: optimizing diffusive search for a target in crowding conditions

Cites Work

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