Pausing and backtracking in transcription under dense traffic conditions

DOI10.1007/S10955-011-0120-3zbMath1216.82009OpenAlexW2083779615WikidataQ63944900 ScholiaQ63944900MaRDI QIDQ540563

Stefan Klumpp

Publication date: 3 June 2011

Published in: Journal of Statistical Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10955-011-0120-3

zbMATH Keywords

exclusion processcooperativityRNA polymerasetraffic models

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Random walks, random surfaces, lattice animals, etc. in equilibrium statistical mechanics (82B41) Lattice systems (Ising, dimer, Potts, etc.) and systems on graphs arising in equilibrium statistical mechanics (82B20)

Related Items (8)

Deterministic and stochastic descriptions of gene expression dynamics ⋮ A traffic flow model for bio-polymerization processes ⋮ RNA polymerase interactions and elongation rate ⋮ A multispecies exclusion model inspired by transcriptional interference ⋮ First-passage processes on a filamentous track in a dense traffic: optimizing diffusive search for a target in crowding conditions ⋮ A biologically inspired two-species exclusion model: effects of RNA polymerase motor traffic on simultaneous DNA replication ⋮ Bi-directional traffic of molecular motors in two antiparallel lanes with asymmetric lane changing rates ⋮ Operon dynamics with state dependent transcription and/or translation delays

Cites Work

• Unnamed Item
• Phase transitions in an exactly soluble one-dimensional exclusion process
• Towards a model for protein production rates
• Phase diagram of one-dimensional driven lattice gases with open boundaries
• Totally asymmetric exclusion processes with particles of arbitrary size
• Exact solution of a 1D asymmetric exclusion model using a matrix formulation

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