Two-State Dynamics for Replicating Two-Strand Systems

DOI10.1007/S11080-007-9064-0zbMATH Open1126.92013arXivq-bio/0512048OpenAlexW1964140208WikidataQ58147450 ScholiaQ58147450MaRDI QIDQ5437444FDOQ5437444

Authors: Diederik Aerts, Marek Czachor 

Publication date: 21 January 2008

Published in: Open Systems & Information Dynamics (Search for Journal in Brave)

Abstract: We propose a formalism for describing two-strand systems of a DNA type by means of soliton von Neumann equations, and illustrate how it works on a simple example exactly solvably by a Darboux transformation. The main idea behind the construction is the link between solutions of von Neumann equations and entangled states of systems consisting of two subsystems evolving in time in opposite directions. Such a time evolution has analogies in realistic DNA where the polymerazes move on leading and lagging strands in opposite directions.

Full work available at URL: https://arxiv.org/abs/q-bio/0512048

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zbMATH Keywords

mutually time-reflected Turing machines

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20) Applications of quantum theory to specific physical systems (81V99)

Cites Work

• Lie-Nambu and beyond
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• The reduced self-dual Yang–Mills equation, binary and infinitesimal Darboux transformations
• Irreversibility and causality. Semigroups and rigged Hilbert spaces. A selection of articles presented at the 21st international colloquium on group theoretical methods in physics (ICGTMP) at Goslar, Germany, July 16--21, 1996. Dedicated to Günther Ludwig on the occasion of his 80th birthday
• Darboux covariant equations of von Neumann type and their generalizations
• Title not available (Why is that?)
• Elementary and binary Darboux transformations at rings
• Intertwine operators and elementary Darboux transforms in differential rings and modules

Cited In (6)

• Chains of Space-Time Open Systems and DNA
• Spectra of nonlocally bound quantum systems
• Stationary states in nonlocal type dynamics of composite systems
• Systems, environments, and soliton rate equations: toward realistic modeling
• Calculating two-strand jellyfish relations
• MOLECULAR REPLICATOR DYNAMICS

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