Protein threading by linear programming

MaRDI QIDQ5456767zbMATHFDO

Authors Jinbo Xu, Guohin Lin, Dongsup Kim, Ying Xu, Ming Li

Publication date 14 April 2008

Mathematics Subject Classification ID

Linear programming (90C05) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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Cited in

(12)

• Local protein threading by mixed integer programming
• Protein threading by linear programming: theoretical analysis and computational results
• Large-scale linear programming techniques for the design of protein folding potentials
• Genetic threading
• CONCORD: a consensus method for protein secondary structure prediction via mixed integer linear optimization
• An algorithm for simultaneous backbone threading and side-chain packing
• An algorithm for simultaneous backbone threading and side-chain packing
• Parallel evolution strategy on grids for the protein threading problem
• scientific article; zbMATH DE number 1750186 (Why is no real title available?)
• A new graph theoretic approach for protein threading
• A linear assignment approach for the least-squares protein morphing problem
• Protein threading: from mathematical models to parallel implementations

Describes a project that uses

Uses Software

• RAPTOR

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