On computing the nearest neighbor interchange distance

zbMATH Open1133.92347MaRDI QIDQ5457044FDOQ5457044

Authors: Xin He, Tao Jiang, John Tromp, Louxin Zhang, Bhaskar Dasgupta, Ming Li Edit this on Wikidata

Publication date: 14 April 2008

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Mathematics Subject Classification ID

Problems related to evolution (92D15) Analysis of algorithms and problem complexity (68Q25) Analysis of algorithms (68W40) Computational difficulty of problems (lower bounds, completeness, difficulty of approximation, etc.) (68Q17)

Cited In (19)

• A computationally efficient approximation to the nearest neighbor interchange metric
• Neighborhoods of phylogenetic trees: exact and asymptotic counts
• Neighborhood principle driven ICF algorithm and graph distance calculations
• Walks in phylogenetic treespace
• Approximating geodesic tree distance
• Fast algorithms for the rooted triplet distance between caterpillars
• Title not available (Why is that?)
• A note on the path interval distance
• Exploiting pseudo-locality of interchange distance
• Approximating the nearest neighbor intercharge distance for non-uniform-degree evolutionary trees
• Benefit of Interpolation in Nearest Neighbor Algorithms
• The tree nearest on average to a given set of trees
• Computing nearest neighbour interchange distances between ranked phylogenetic trees
• Properties for the Fréchet mean in Billera-Holmes-Vogtmann treespace
• Some notes on the nearest neighbour interchange distance
• Discrete coalescent trees
• The combinatorics of discrete time-trees: theory and open problems
• A tree \(\cdot\) a window \(\cdot\) a hill; generalization of nearest- neighbor interchange in phylogenetic optimization
• Distributions of topological tree metrics between a species tree and a gene tree

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