On the sorting-complexity of suffix tree construction

From MaRDI portal
Publication:5487881

DOI10.1145/355541.355547zbMath1094.68694OpenAlexW2024147613WikidataQ56431599 ScholiaQ56431599MaRDI QIDQ5487881

No author found.

Publication date: 12 September 2006

Published in: Journal of the ACM (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1145/355541.355547




Related Items

Efficient computation of sequence mappabilityMinimal unique palindromic substrings after single-character substitutionGrammar index by induced suffix sortingSelf-indexed Text Compression Using Straight-Line ProgramsSuffix-sorting via Shannon-Fano-Elias codesEfficient computation of substring equivalence classes with suffix arraysString Indexing with Compressed PatternsLinear-time computation of DAWGs, symmetric indexing structures, and MAWs for integer alphabetsGeneralizations of suffix arrays to multi-dimensional matrices.A new efficient indexing algorithm for one-dimensional real scaled patternsLinear-time construction of two-dimensional suffix treesOn demand string sorting over unbounded alphabetsUnnamed ItemOn-line construction of parameterized suffix trees for large alphabetsLightweight data indexing and compression in external memoryThe indexing for one-dimensional proportionally-scaled stringsEfficient retrieval of approximate palindromes in a run-length encoded stringThe parameterized suffix trayPSIST: a scalable approach to indexing protein structures using suffix treesThe longest common substring problemComputing Longest Single-arm-gapped Palindromes in a StringComputing longest palindromic substring after single-character or block-wise editsAlphabet-independent linear-time construction of compressed suffix arrays using \(o(n \log n)\)-bit working spaceLinear time algorithm for the longest common repeat problemPractical Performance of Space Efficient Data Structures for Longest Common Extensions.Algorithms for Indexing Highly Similar DNA SequencesFull-Text Indexes for High-Throughput SequencingSubstring Range ReportingSubstring range reportingFaster approximate string matching for short patternsEfficient construction of maximal and minimal representations of motifs of a stringOn suffix extensions in suffix treesImproving on-line construction of two-dimensional suffix trees for square matricesInternal dictionary matchingIndexing weighted sequences: neat and efficientLinearized suffix tree: An efficient index data structure with the capabilities of suffix trees and suffix arraysEfficient computation of longest single-arm-gapped palindromes in a stringEfficient representation and counting of antipower factors in wordsFinding Gapped Palindromes OnlineOnline algorithms for constructing linear-size suffix trieFaster queries for longest substring palindrome after block editQuasi-Linear-Time Algorithm for Longest Common Circular FactorReal two dimensional scaled matchingEfficient indexing algorithms for one-dimensional discretely-scaled stringsThe suffix binary search tree and suffix AVL treeGeneralizations of suffix arrays to multi-dimensional matrices.THE VIRTUAL SUFFIX TREEOrthogonal Range Searching for Text IndexingSliding suffix treeConstructing suffix arrays in linear timeONLINE AND DYNAMIC RECOGNITION OF SQUAREFREE STRINGSInducing Suffix and LCP Arrays in External MemorySuffix trays and suffix trists: structures for faster text indexingLongest substring palindrome after edit