Browndye: A software package for Brownian dynamics

DOI10.1016/J.CPC.2010.07.022MaRDI QIDQ548955zbMATHOpenAlexDBLPWikidataFDO

Authors Gary A. Huber, J. Andrew McCammon

Publication date 30 June 2011

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL http://europepmc.org/articles/pmc2994412

zbMATH Keywords

diffusionkineticsprotein association

Mathematics Subject Classification ID

Software, source code, etc. for problems pertaining to biology (92-04) Biophysics (92C05)

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Cites work

• Handbook of stochastic methods for physics, chemistry and natural sciences.
• The Stationary Bootstrap

Cited in

(4)

• A Fourier-series-based kernel-independent fast multipole method
• Ribosome Builder: a software project to simulate the ribosome
• An enhanced version of SMMP-open-source software package for simulation of proteins
• A fast algorithm for Brownian dynamics simulation with hydrodynamic interactions

Describes a project that uses

Uses Software

• APBS
• OCaml
• Browndye
• Macrodox
• UHBD
• SDA
• VMD

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