Empirical Bayes Estimation of a Sparse Vector of Gene Expression Changes

DOI10.2202/1544-6115.1132MaRDI QIDQ5700532zbMATH OpenOpenAlexWikidataFDO

Authors Stephen Erickson, Chiara Sabatti

Publication date 28 October 2005

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL http://www.bepress.com/sagmb/vol4/iss1/art22, http://www.escholarship.org/uc/item/4gw5g2nf

Mathematics Subject Classification ID

Estimation in survival analysis and censored data (62N02) Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Empirical decision procedures; empirical Bayes procedures (62C12) Paired and multiple comparisons; multiple testing (62J15)

Recommendations

• Hierarchical Bayes variable selection and microarray experiments
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Empirical Bayes Analysis of a Microarray Experiment
• Statistical analysis of microarray data: a Bayesian approach
• Hierarchical Bayes models for cDNA microarray gene expression

Cited in

(18)

• Thresholding rules for recovering a sparse signal from microarray experiments
• Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression
• The \(\ell_{2,q}\) regularized group sparse optimization: lower bound theory, recovery bound and algorithms
• Simultaneous estimation based on empirical likelihood and general maximum likelihood estimation
• A perturbation analysis of nonconvex block-sparse compressed sensing
• Improved variational Bayes inference for transcript expression estimation
• Signal recovery under mutual incoherence property and oracle inequalities
• Truncated sparse approximation property and truncated \(q\)-norm minimization
• Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays
• Bayesian shrinkage estimation of the relative abundance of mRNA transcripts using SAGE
• Block-sparse recovery and rank minimization using a weighted \(l_p-l_q\) model
• A robust sequential Bayesian method for identification of differentially expressed genes
• On block coherence of frames
• Tail Posterior Probability for Inference in Pairwise and Multiclass Gene Expression Data
• On the strong convergence of forward-backward splitting in reconstructing jointly sparse signals
• Adaptive sparse estimation with side information
• Hierarchical Bayes variable selection and microarray experiments
• Bayesian Hierarchical Varying-Sparsity Regression Models with Application to Cancer Proteogenomics

This page was built for publication: Empirical Bayes Estimation of a Sparse Vector of Gene Expression Changes

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5700532)