Fully parallel mesh I/O using PETSc DMPlex with an application to waveform modeling
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Publication:5857724
directed acyclic graphunstructured meshpartitioningspectral-element methodparallel I/OPETScDMPlexseismic waveform modelingtopological interpolation
Applications of graph theory (05C90) Parallel numerical computation (65Y05) Wave equation (35L05) Mesh generation, refinement, and adaptive methods for the numerical solution of initial value and initial-boundary value problems involving PDEs (65M50) Software, source code, etc. for problems pertaining to numerical analysis (65-04)
Abstract: Large-scale PDE simulations using high-order finite-element methods on unstructured meshes are an indispensable tool in science and engineering. The widely used open-source PETSc library offers an efficient representation of generic unstructured meshes within its DMPlex module. This paper details our recent implementation of parallel mesh reading and topological interpolation (computation of edges and faces from a cell-vertex mesh) into DMPlex. We apply these developments to seismic wave propagation scenarios on Mars as an example application. The principal motivation is to overcome single-node memory limits and reach mesh sizes which were impossible before. Moreover, we demonstrate that scalability of I/O and topological interpolation goes beyond 12'000 cores, and memory-imposed limits on mesh size vanish.
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Cited in
(7)- A Numerical study of Landau damping with PETSc-PIC
- Scalable FEA on non-conforming assembly mesh
- PETSc DMNetwork: a library for scalable network PDE-based multiphysics simulations
- Efficient N-to-M checkpointing algorithm for finite element simulations
- Efficient mesh management in firedrake using PETSc DMPlex
- Developing a geodynamics simulator with PETSc
- Ray decomposition radiation transport for high performance computing
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