Reconstruction of pedigrees in clonal plant populations

DOI10.1016/J.TPB.2010.05.002MaRDI QIDQ5915605zbMATH OpenOpenAlexWikidataFDO

Authors Markus Riester, Peter F. Stadler, Konstantin Klemm

Publication date 5 December 2018

Published in Theoretical Population Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tpb.2010.05.002

zbMATH Keywords

pedigreeMCMCSNPmicrosatelliteselfingclonalparentage

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Problems related to evolution (92D15) Plant biology (92C80)

Recommendations

• Reconstruction of pedigrees in clonal plant populations
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• Efficient maximum likelihood pedigree reconstruction
• Reconstructing pedigrees using probabilistic analysis of ISSR amplification
• Probabilistic reconstruction of genealogies for polyploid plant species

Cites work

• scientific article; zbMATH DE number 41891 (Why is no real title available?)
• scientific article; zbMATH DE number 1390097 (Why is no real title available?)
• A Markov chain Monte Carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a Fisher-Wright model with partial selfing
• A graphical approach to relatedness inference
• A simulated annealing algorithm for maximum likelihood pedigree reconstruction
• Efficient maximum likelihood pedigree reconstruction
• On the Irreducibility of a Markov Chain Defined on a Space of Genotype Configurations by a Sampling Scheme
• Statistical inference from genetic data on pedigrees
• The relationship between single parent and parent pair genetic likelihoods in genealogy reconstruction

Cited in

(7)

• Reconstructing pedigrees using probabilistic analysis of ISSR amplification
• Reconstruction of pedigrees in clonal plant populations
• A bootstrap assessment of variability in pedigree reconstruction based on genetic markers
• Improved maximum likelihood reconstruction of complex multi-generational pedigrees
• Large-scale parentage inference with SNPs: an efficient algorithm for statistical confidence of parent pair allocations
• A Markov chain Monte Carlo strategy for sampling from the joint posterior distribution of pedigrees and population parameters under a Fisher-Wright model with partial selfing
• Probabilistic reconstruction of genealogies for polyploid plant species

Describes a project that uses

Uses Software

• FRANz
• Cervus
• GENEPOP
• PARENTE
• FaMoz

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